Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL18A1 ENSSSCG00000038089

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Description

collagen type XVIII alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:86869]

Location

Primary_assembly 13: 207,940,948-207,982,938 forward strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 5 transcripts (splice variants), 179 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000045242.3	COL18A1-205	5501	1755aa	ENSSSCP00000031327.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZIL9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000027870.4	COL18A1-202	4856	1613aa	ENSSSCP00000023415.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LH70	-
ENSSSCT00000069520.2	COL18A1-203	4703	1562aa	ENSSSCP00000070405.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R229	-
ENSSSCT00000057398.3	COL18A1-204	4472	1485aa	ENSSSCP00000058425.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BQN5	-
ENSSSCT00000078682.2	COL18A1-201	3942	1238aa	ENSSSCP00000065599.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R4W0	-

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Summary

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