Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CPSF6 ENSSSCG00000038031

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Description

cleavage and polyadenylation specific factor 6 [Source:VGNC Symbol;Acc:VGNC:86962]

Location

Primary_assembly 5: 33,525,689-33,555,226 forward strand.

Sscrofa11.1:CM000816.5

About this gene

This gene has 4 transcripts (splice variants), 195 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000039379.2	CPSF6-203	5151	588aa	ENSSSCP00000039181.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A5N6 A0A4X1W3H2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000055283.3	CPSF6-201	1679	551aa	ENSSSCP00000042981.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AGJ7 A0A8D1FXD0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000041371.3	CPSF6-202	1578	500aa	ENSSSCP00000032995.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZMZ2	-
ENSSSCT00000096376.1	CPSF6-204	283	56aa	ENSSSCP00000076756.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VXK4 A0A8W4FBI4	-

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Summary

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