Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: GABPA ENSSSCG00000037655

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Description

GA binding protein transcription factor subunit alpha [Source:VGNC Symbol;Acc:VGNC:103945]

Location

Primary_assembly 13: 189,289,996-189,327,497 forward strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 2 transcripts (splice variants), 215 orthologues and 27 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000060835.2	GABPA-201	7144	442aa	ENSSSCP00000039877.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A7F8 A0A8D1FTV4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000057131.3	GABPA-202	4948	436aa	ENSSSCP00000044664.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AL85 A0A4X1UF03	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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