Primary_assembly 9: 92,837,941-92,926,120 forward strand.
Sscrofa11.1:CM000820.5
This gene has 5 transcripts (splice variants), 158 orthologues and 12 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSSSCT00000081580.2 | - | 4504 | 1153aa | ENSSSCP00000063562.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A5G2QFQ1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000056913.3 | - | 4468 | 1235aa | ENSSSCP00000042243.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287AE00 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| ENSSSCT00000022954.4 | - | 4306 | 1181aa | ENSSSCP00000019701.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3L6P9 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000073981.1 | - | 3594 | 1197aa | ENSSSCP00000074578.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A5G2RC30 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000081590.2 | - | 3477 | 1158aa | ENSSSCP00000062063.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A5G2QEG3 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
