Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SRRM1 ENSSSCG00000032947

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Description

serine and arginine repetitive matrix 1 [Source:VGNC Symbol;Acc:VGNC:93467]

Location

Primary_assembly 6: 82,286,211-82,343,766 forward strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 5 transcripts (splice variants) and 156 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000059743.3	SRRM1-205	3038	968aa	ENSSSCP00000047802.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AV47 A0A8D1X6V3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000053795.3	SRRM1-202	4614	791aa	ENSSSCP00000039623.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A778 A0A8D0PKG6	-
ENSSSCT00000065408.3	SRRM1-204	2904	875aa	ENSSSCP00000045552.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ANS5 A0A8D0PDU5	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000065942.3	SRRM1-201	2759	876aa	ENSSSCP00000040914.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AAV3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000064553.3	SRRM1-203	2710	848aa	ENSSSCP00000032511.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZM20	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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