Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ALYREF ENSSSCG00000032655

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Description

Aly/REF export factor [Source:VGNC Symbol;Acc:VGNC:98973]

Location

Primary_assembly 12: 1,092,329-1,103,054 forward strand.

Sscrofa11.1:CM000823.5

About this gene

This gene has 2 transcripts (splice variants), 157 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000089008.2	ALYREF-202	1338	348aa	ENSSSCP00000071154.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R218	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSSSCT00000057499.2	ALYREF-201	1080	262aa	ENSSSCP00000054594.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BET5 A0A8D1SAG0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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