Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RFFL ENSSSCG00000032552

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Description

ring finger and FYVE like domain containing E3 ubiquitin protein ligase [Source:VGNC Symbol;Acc:VGNC:98289]

Location

Primary_assembly 12: 40,075,337-40,151,043 forward strand.

Sscrofa11.1:CM000823.5

About this gene

This gene has 4 transcripts (splice variants), 227 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000041104.3	RFFL-204	3797	367aa	ENSSSCP00000039652.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A6Z9 A0A8D1P3D4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000047688.3	RFFL-203	3551	363aa	ENSSSCP00000052536.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B8W0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000065635.3	RFFL-202	3506	335aa	ENSSSCP00000047905.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AUW8	-
ENSSSCT00000027235.4	RFFL-201	1494	355aa	ENSSSCP00000022923.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1P1E0 I3LFT1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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