Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SMG1 ENSSSCG00000032531

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Description

SMG1 nonsense mediated mRNA decay associated PI3K related kinase [Source:VGNC Symbol;Acc:VGNC:93248]

Location

Primary_assembly 3: 26,653,979-26,770,322 forward strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 5 transcripts (splice variants), 222 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000054686.3	SMG1-205	12180	3659aa	ENSSSCP00000051228.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A480EFT1 A0A8D1KM44	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000067514.2	SMG1-204	7757	2041aa	ENSSSCP00000069479.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QX10	-
ENSSSCT00000032370.4	SMG1-201	4190	141aa	ENSSSCP00000025526.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LN54	-
ENSSSCT00000104359.1	SMG1-203	2559	629aa	ENSSSCP00000078802.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0SSN8 A0A8W4FH90	-
ENSSSCT00000082276.2	SMG1-202	981	324aa	ENSSSCP00000071412.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RII4	-

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Summary

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