Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: USP39 ENSSSCG00000030435

.

Description

ubiquitin specific peptidase 39 [Source:VGNC Symbol;Acc:VGNC:94763]

Location

Primary_assembly 3: 59,121,048-59,156,442 reverse strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 7 transcripts (splice variants), 208 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000078144.1	USP39-204	5483	565aa	ENSSSCP00000071597.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W038 A0A5G2RBP5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000070853.2	USP39-205	5480	487aa	ENSSSCP00000069463.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QZ98	-
ENSSSCT00000092687.1	USP39-206	5405	462aa	ENSSSCP00000078852.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FHE1	-
ENSSSCT00000083223.1	USP39-207	5405	462aa	ENSSSCP00000066859.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QRY0	-
ENSSSCT00000027775.4	USP39-203	1653	536aa	ENSSSCP00000022913.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W660 I3LFS1	-
ENSSSCT00000071739.1	USP39-202	1509	488aa	ENSSSCP00000066479.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W5U7 A0A5G2QX14	-
ENSSSCT00000095894.1	USP39-201	1410	469aa	ENSSSCP00000077157.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FFR3	-

.

Summary

.

.