Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CAPNS1 ENSSSCG00000030149

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Description

calpain small subunit 1 [Source:NCBI gene (formerly Entrezgene);Acc:397587]

Gene Synonyms

CAPN4

Location

Primary_assembly 6: 45,511,295-45,518,610 forward strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 3 transcripts (splice variants), 299 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000031590.4	CAPNS1-201	1489	274aa	ENSSSCP00000025968.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5S6GT88	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000104814.1	CAPNS1-203	1375	236aa	ENSSSCP00000076628.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TE30 A0A8W4FCP9	-
ENSSSCT00000095232.1	CAPNS1-202	775	94aa	ENSSSCP00000075745.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TFJ0 A0A8W4F8U9	-

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Summary

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