Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ARCN1 ENSSSCG00000030053

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Description

archain 1 [Source:VGNC Symbol;Acc:VGNC:85443]

Location

Primary_assembly 9: 45,863,559-45,897,613 forward strand.

Sscrofa11.1:CM000820.5

About this gene

This gene has 4 transcripts (splice variants) and 229 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000053716.3	ARCN1-204	3575	620aa	ENSSSCP00000044654.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AL76	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000061951.3	ARCN1-202	3801	499aa	ENSSSCP00000038767.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A480	-
ENSSSCT00000028599.4	ARCN1-203	3675	618aa	ENSSSCP00000021552.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SQ23 I3LBY0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000070527.1	ARCN1-201	555	82aa	ENSSSCP00000062305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SP78 A0A5G2QF14	-

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Summary

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