Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
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  - Gene tree
  - Orthologues
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Ontologies
Phenotypes
Genetic Variation
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ID History
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Gene: MEPE ENSSSCG00000028730

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Description

matrix extracellular phosphoglycoprotein [Source:VGNC Symbol;Acc:VGNC:90145]

Location

Primary_assembly 8: 131,186,888-131,200,330 reverse strand.

Sscrofa11.1:CM000819.5

About this gene

This gene has 2 transcripts (splice variants) and 90 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000088046.2	MEPE-201	1697	554aa	ENSSSCP00000063553.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QN69 A0A8D1KU82	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000024350.4	MEPE-202	1604	523aa	ENSSSCP00000023100.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1H2W3 I3LGA7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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