Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CALCOCO1 ENSSSCG00000028481

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Description

calcium binding and coiled-coil domain 1 [Source:VGNC Symbol;Acc:VGNC:86140]

Location

Primary_assembly 5: 18,910,700-18,930,321 reverse strand.

Sscrofa11.1:CM000816.5

About this gene

This gene has 3 transcripts (splice variants), 253 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000032347.4	CALCOCO1-202	3113	715aa	ENSSSCP00000027143.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1WAE8 I3LSQ0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000037970.3	CALCOCO1-203	4128	633aa	ENSSSCP00000049296.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AYQ8 A0A8D1QNP0	-
ENSSSCT00000099798.1	CALCOCO1-201	3887	581aa	ENSSSCP00000077519.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FDY1	-

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Summary

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