Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PRPF38A ENSSSCG00000028288

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Description

pre-mRNA processing factor 38A [Source:HGNC Symbol;Acc:HGNC:25930]

Location

Primary_assembly 6: 159,797,626-159,819,052 reverse strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 2 transcripts (splice variants), 220 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000029160.4	PRPF38A-202	2323	312aa	ENSSSCP00000025857.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1WC87 I3LP32	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000074402.1	PRPF38A-201	1231	284aa	ENSSSCP00000062518.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QEC0 A0A8D1SG55	-

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Summary

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