Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: GRIA2 ENSSSCG00000024685

.

Description

glutamate ionotropic receptor AMPA type subunit 2 [Source:VGNC Symbol;Acc:VGNC:88671]

Location

Primary_assembly 8: 46,078,276-46,241,914 forward strand.

Sscrofa11.1:CM000819.5

About this gene

This gene has 5 transcripts (splice variants), 320 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000066201.3	GRIA2-205	6367	883aa	ENSSSCP00000045156.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AMC2 A0A4X1U533	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000039120.3	GRIA2-204	5621	883aa	ENSSSCP00000042410.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AEG6 A0A4X1U552	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000084816.2	GRIA2-203	3367	836aa	ENSSSCP00000072027.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RCN3 A0A8D1CAX9	-
ENSSSCT00000087366.2	GRIA2-202	2927	846aa	ENSSSCP00000067600.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QRQ2 A0A8D0Z7B9	-
ENSSSCT00000022356.4	GRIA2-201	2864	813aa	ENSSSCP00000023568.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1U5S5 I3LHM1	-

.

Summary

.

.