Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SNX2 ENSSSCG00000022790

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Description

sorting nexin 2 [Source:VGNC Symbol;Acc:VGNC:93312]

Location

Primary_assembly 2: 126,271,267-126,334,119 forward strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 4 transcripts (splice variants), 210 orthologues and 16 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000038853.3	SNX2-202	4054	525aa	ENSSSCP00000057658.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BMK7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000051261.2	SNX2-204	6231	521aa	ENSSSCP00000035455.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZUZ1 A0A8D1YH99	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000059250.3	SNX2-203	3937	486aa	ENSSSCP00000050174.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B194	-
ENSSSCT00000030585.4	SNX2-201	1942	497aa	ENSSSCP00000026903.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UCN0 I3LS12	-

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Summary

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