Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL6A1 ENSSSCG00000022506

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Description

collagen type VI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2211]

Location

Primary_assembly 13: 208,295,451-208,313,127 forward strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 3 transcripts (splice variants), 123 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000024347.4	COL6A1-202	3550	1028aa	ENSSSCP00000026963.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LS72	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000083024.2	COL6A1-203	3460	998aa	ENSSSCP00000060149.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2Q7R0	-
ENSSSCT00000039559.3	COL6A1-201	2089	433aa	ENSSSCP00000051801.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B5M9 A0A8D1INM4	-

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Summary

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