Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: DDX42 ENSSSCG00000017289

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Description

DEAD-box helicase 42 [Source:VGNC Symbol;Acc:VGNC:87222]

Location

Primary_assembly 12: 15,114,201-15,165,177 reverse strand.

Sscrofa11.1:CM000823.5

About this gene

This gene has 4 transcripts (splice variants), 210 orthologues and 38 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000018821.4	DDX42-204	4074	963aa	ENSSSCP00000018319.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RSJ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000037329.3	DDX42-202	5145	838aa	ENSSSCP00000046875.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ASN9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000048234.3	DDX42-203	5106	825aa	ENSSSCP00000045049.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AMA9	-
ENSSSCT00000101700.1	DDX42-201	3928	844aa	ENSSSCP00000080477.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FLW6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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