Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CCDC40 ENSSSCG00000017158

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Description

coiled-coil domain containing 40 [Source:VGNC Symbol;Acc:VGNC:86297]

Location

Primary_assembly 12: 2,341,957-2,384,025 reverse strand.

Sscrofa11.1:CM000823.5

About this gene

This gene has 2 transcripts (splice variants) and 190 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000018682.5	CCDC40-202	4161	950aa	ENSSSCP00000018181.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1F233 F1RZ80	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000025111.4	CCDC40-201	3384	924aa	ENSSSCP00000021045.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LAH7	-

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Summary

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