Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LPCAT1 ENSSSCG00000017116

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Description

lysophosphatidylcholine acyltransferase 1 [Source:VGNC Symbol;Acc:VGNC:89788]

Location

Primary_assembly 16: 79,134,465-79,173,772 forward strand.

Sscrofa11.1:CM000827.5

About this gene

This gene has 2 transcripts (splice variants), 248 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000018634.5	LPCAT1-202	3251	534aa	ENSSSCP00000018133.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TM25 F1S029	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000070458.1	LPCAT1-201	5010	486aa	ENSSSCP00000062490.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QFH5 A0A8D0YQ67	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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