Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SLC45A2 ENSSSCG00000016821

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Description

solute carrier family 45 member 2 [Source:VGNC Symbol;Acc:VGNC:93123]

Location

Primary_assembly 16: 19,956,366-20,023,289 reverse strand.

Sscrofa11.1:CM000827.5

About this gene

This gene has 6 transcripts (splice variants), 200 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000018315.5	SLC45A2-206	2053	654aa	ENSSSCP00000017819.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SP14	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000072187.2	SLC45A2-202	3580	532aa	ENSSSCP00000071434.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R2W6	-
ENSSSCT00000075169.2	SLC45A2-203	3562	526aa	ENSSSCP00000072911.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RE90	-
ENSSSCT00000075922.2	SLC45A2-204	2423	453aa	ENSSSCP00000069979.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RFV6	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000086392.2	SLC45A2-205	1859	595aa	ENSSSCP00000073410.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RAQ1	-
ENSSSCT00000018314.4	SLC45A2-201	1055	334aa	ENSSSCP00000017818.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SP15	-

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Summary

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