Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PIKFYVE ENSSSCG00000016147

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Description

phosphoinositide kinase, FYVE-type zinc finger containing [Source:VGNC Symbol;Acc:VGNC:96023]

Location

Primary_assembly 15: 111,372,173-111,467,899 forward strand.

Sscrofa11.1:CM000826.5

About this gene

This gene has 6 transcripts (splice variants), 203 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000063694.3	PIKFYVE-204	9074	2098aa	ENSSSCP00000054023.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BD34	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000017580.5	PIKFYVE-205	8909	2043aa	ENSSSCP00000017106.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1PZC0 F1SST9	-
ENSSSCT00000065767.3	PIKFYVE-203	8896	2042aa	ENSSSCP00000050089.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B0Z0 A0A8D1XN06	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000038596.2	PIKFYVE-206	8639	1987aa	ENSSSCP00000045702.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ANQ9 A0A8D1BRZ4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000076507.2	PIKFYVE-201	2534	462aa	ENSSSCP00000067196.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UZE7 A0A5G2QST3	-
ENSSSCT00000046313.3	PIKFYVE-202	2501	451aa	ENSSSCP00000052183.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B7V0 A0A4X1UYC8	-

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Summary

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