Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NCKAP1 ENSSSCG00000016019

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Description

NCK associated protein 1 [Source:VGNC Symbol;Acc:VGNC:96432]

Location

Primary_assembly 15: 88,425,142-88,528,326 reverse strand.

Sscrofa11.1:CM000826.5

About this gene

This gene has 5 transcripts (splice variants), 224 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000046639.3	NCKAP1-202	6470	1134aa	ENSSSCP00000044211.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AJY4 A0A4X1SRB3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000079749.2	NCKAP1-205	6693	1128aa	ENSSSCP00000065088.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SRE6 A0A5G2QKN1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000017442.5	NCKAP1-203	6455	1129aa	ENSSSCP00000016973.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SRL5 F1RYL3	-
ENSSSCT00000055458.3	NCKAP1-204	6338	1090aa	ENSSSCP00000040828.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AAK8	-
ENSSSCT00000053703.3	NCKAP1-201	4315	1095aa	ENSSSCP00000058212.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BQ29 A0A8D1MUX8	-

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Summary

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