Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Gene: TPR ENSSSCG00000015576

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Description

translocated promoter region, nuclear basket protein [Source:VGNC Symbol;Acc:VGNC:108623]

Location

Primary_assembly 9: 127,481,684-127,540,398 reverse strand.

Sscrofa11.1:CM000820.5

About this gene

This gene has 3 transcripts (splice variants) and 275 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000056338.3	TPR-203	7700	2518aa	ENSSSCP00000031528.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZJ74 A0A4X1TT55	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000016969.5	TPR-202	7531	2363aa	ENSSSCP00000016515.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1S300	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000099634.1	TPR-201	2495	802aa	ENSSSCP00000079483.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FJI0	-

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Summary

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