Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SOX13 ENSSSCG00000015277

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Description

SRY-box transcription factor 13 [Source:VGNC Symbol;Acc:VGNC:93352]

Location

Primary_assembly 9: 64,731,969-64,780,942 forward strand.

Sscrofa11.1:CM000820.5

About this gene

This gene has 5 transcripts (splice variants), 211 orthologues and 20 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000070278.2	SOX13-203	3694	676aa	ENSSSCP00000059630.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2Q772 A0A8D1TR46	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000016646.5	SOX13-205	4108	614aa	ENSSSCP00000016200.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D2CDI2 F1S3U8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000070039.2	SOX13-201	3770	615aa	ENSSSCP00000064889.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A480KAT6 A0A4X1V0X8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000067643.1	SOX13-202	3638	638aa	ENSSSCP00000059685.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2Q7B2 A0A8D1E426	-
ENSSSCT00000070526.2	SOX13-204	3635	656aa	ENSSSCP00000061586.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QDA6 A0A8D0X0A3	-

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Summary

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