Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: MCAM ENSSSCG00000015116

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Description

melanoma cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:6934]

Location

Primary_assembly 9: 46,512,784-46,522,083 reverse strand.

Sscrofa11.1:CM000820.5

About this gene

This gene has 5 transcripts (splice variants), 277 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000078769.2	MCAM-201	3103	667aa	ENSSSCP00000066010.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R5Z3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000096637.1	MCAM-202	3091	663aa	ENSSSCP00000076885.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FC38	-
ENSSSCT00000016482.4	MCAM-205	3069	665aa	ENSSSCP00000016039.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SAG9	-
ENSSSCT00000034703.4	MCAM-203	3007	635aa	ENSSSCP00000029660.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7GP49	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000034249.2	MCAM-204	2834	590aa	ENSSSCP00000028316.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SE16 K7GKE2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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