Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NSD1 ENSSSCG00000014044

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Description

nuclear receptor binding SET domain protein 1 [Source:VGNC Symbol;Acc:VGNC:90904]

Location

Primary_assembly 2: 80,654,379-80,809,059 reverse strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 3 transcripts (splice variants), 297 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000055036.3	NSD1-202	8477	2701aa	ENSSSCP00000046245.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AA00 A0A4X1SGL6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000015341.4	NSD1-203	7954	2432aa	ENSSSCP00000014933.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SFK7 F1S3C1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000071466.2	NSD1-201	2910	328aa	ENSSSCP00000062712.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A8M2 A0A8D1QVH5	-

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Summary

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