Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CNOT6 ENSSSCG00000014009

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Description

CCR4-NOT transcription complex subunit 6 [Source:VGNC Symbol;Acc:VGNC:86837]

Location

Primary_assembly 2: 78,132,939-78,202,492 reverse strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 3 transcripts (splice variants), 234 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000015302.5	CNOT6-202	4016	557aa	ENSSSCP00000014894.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VVT4 F1S5Q4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000047369.2	CNOT6-201	5366	545aa	ENSSSCP00000037899.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A1V1 A0A8D0Q4J7	-
ENSSSCT00000044313.3	CNOT6-203	4529	552aa	ENSSSCP00000052003.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B6C8 A0A8D1XGJ1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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