Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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- Gene gain/loss tree
- Orthologues
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  - Gene tree
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Gene: AMBRA1 ENSSSCG00000013262

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Description

autophagy and beclin 1 regulator 1 [Source:VGNC Symbol;Acc:VGNC:85274]

Location

Primary_assembly 2: 15,935,375-16,119,079 forward strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 4 transcripts (splice variants) and 226 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000014486.5	AMBRA1-202	5347	1296aa	ENSSSCP00000014094.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1G7P5 F1SI99	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000039176.3	AMBRA1-203	5167	1236aa	ENSSSCP00000034946.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZTP1 A0A8D1ILN1	-
ENSSSCT00000045828.3	AMBRA1-204	5077	1206aa	ENSSSCP00000056162.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BIG8 A0A8D1LNJ9	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000059623.3	AMBRA1-201	5017	1267aa	ENSSSCP00000041532.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ACI1 A0A8D2BBC0	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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