Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SLC6A1 ENSSSCG00000011577

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Description

solute carrier family 6 member 1 [Source:VGNC Symbol;Acc:VGNC:93153]

Location

Primary_assembly 13: 67,179,765-67,197,107 forward strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 6 transcripts (splice variants), 276 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000012669.5	SLC6A1-204	2353	605aa	ENSSSCP00000012336.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SQA4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000050804.3	SLC6A1-206	2353	605aa	ENSSSCP00000034131.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZR77	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000098414.1	SLC6A1-203	1820	458aa	ENSSSCP00000081081.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FR95	-
ENSSSCT00000070749.2	SLC6A1-205	1820	458aa	ENSSSCP00000069117.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UNH8 A0A5G2RE67	-
ENSSSCT00000073399.2	SLC6A1-201	641	183aa	ENSSSCP00000070313.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UPH4 A0A5G2QZJ3	-
ENSSSCT00000101606.1	SLC6A1-202	635	180aa	ENSSSCP00000078672.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FHF8	-

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Summary

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