Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: SEC13 ENSSSCG00000011572

.

Description

SEC13 homolog, nuclear pore and COPII coat complex component [Source:VGNC Symbol;Acc:VGNC:92668]

Location

Primary_assembly 13: 66,480,169-66,524,384 reverse strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 8 transcripts (splice variants), 221 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000106433.1	SEC13-202	5061	350aa	ENSSSCP00000078809.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FIU8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000095584.1	SEC13-203	5034	341aa	ENSSSCP00000077917.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0N8L0 A0A8W4FF27	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000012664.5	SEC13-208	4915	306aa	ENSSSCP00000012331.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SQA9	-
ENSSSCT00000076311.2	SEC13-206	4808	332aa	ENSSSCP00000072024.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RJI2	-
ENSSSCT00000088448.2	SEC13-207	4784	324aa	ENSSSCP00000074573.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UQD7 A0A5G2RC24	-
ENSSSCT00000087567.2	SEC13-204	4757	315aa	ENSSSCP00000073167.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R7E5	-
ENSSSCT00000088438.2	SEC13-201	3963	315aa	ENSSSCP00000073337.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RF34	-
ENSSSCT00000088278.2	SEC13-205	1324	307aa	ENSSSCP00000064632.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1USJ2 A0A5G2QJI0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.