Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SGPL1 ENSSSCG00000010274

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Description

sphingosine-1-phosphate lyase 1 [Source:VGNC Symbol;Acc:VGNC:92797]

Location

Primary_assembly 14: 73,724,100-73,781,800 forward strand.

Sscrofa11.1:CM000825.5

About this gene

This gene has 5 transcripts (splice variants), 211 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000045496.3	SGPL1-201	4304	609aa	ENSSSCP00000054654.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BEZ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000047829.2	SGPL1-205	6122	558aa	ENSSSCP00000047377.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ATW8	-
ENSSSCT00000042658.2	SGPL1-203	5531	589aa	ENSSSCP00000055280.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BGV0 A0A8D1PLX7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000056069.3	SGPL1-202	4740	527aa	ENSSSCP00000046783.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ARS0 A0A8D1TDP8	-
ENSSSCT00000064467.3	SGPL1-204	3281	597aa	ENSSSCP00000048727.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AX55 A0A8D0Y1S1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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