Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: COL13A1 ENSSSCG00000010256

.

Description

collagen type XIII alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:86865]

Location

Primary_assembly 14: 72,787,303-72,953,095 forward strand.

Sscrofa11.1:CM000825.5

About this gene

This gene has 9 transcripts (splice variants), 143 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000090330.2	COL13A1-202	2694	726aa	ENSSSCP00000074365.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RNE8 A0A8D2AA27	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000086856.2	COL13A1-203	2661	715aa	ENSSSCP00000066954.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QS57 A0A8D1UF42	-
ENSSSCT00000045080.3	COL13A1-204	2595	693aa	ENSSSCP00000042151.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ADR0 A0A8D2AC09	-
ENSSSCT00000073294.2	COL13A1-205	2568	684aa	ENSSSCP00000069620.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QXG9	-
ENSSSCT00000073552.2	COL13A1-201	2556	682aa	ENSSSCP00000060907.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QRL9	-
ENSSSCT00000038336.3	COL13A1-206	2514	666aa	ENSSSCP00000055268.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BFF8 A0A8D2ACJ8	-
ENSSSCT00000049125.3	COL13A1-207	2484	656aa	ENSSSCP00000037928.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A1X1	-
ENSSSCT00000011226.5	COL13A1-208	2445	643aa	ENSSSCP00000010934.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D2AC27 F1SUE9	-
ENSSSCT00000071348.2	COL13A1-209	2340	608aa	ENSSSCP00000067301.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QT29 A0A8D2CIB1	-

.

Summary

.

.