Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SPTLC1 ENSSSCG00000009594

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Description

serine palmitoyltransferase long chain base subunit 1 [Source:VGNC Symbol;Acc:VGNC:93439]

Location

Primary_assembly 14: 3,081,972-3,138,103 reverse strand.

Sscrofa11.1:CM000825.5

About this gene

This gene has 4 transcripts (splice variants), 212 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000010516.3	SPTLC1-203	2788	473aa	ENSSSCP00000010243.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SDS2 F1RN05	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000085991.1	SPTLC1-202	2708	470aa	ENSSSCP00000071714.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RJ17 A0A8D1SY88	-
ENSSSCT00000073089.2	SPTLC1-204	2640	441aa	ENSSSCP00000070461.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R287 A0A8D0J7J9	-
ENSSSCT00000066754.2	SPTLC1-201	503	143aa	ENSSSCP00000063090.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QEI9 A0A8D0YYU2	-

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Summary

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