Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SPARCL1 ENSSSCG00000009222

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Description

SPARC like 1 [Source:VGNC Symbol;Acc:VGNC:93376]

Location

Primary_assembly 8: 131,386,973-131,431,200 forward strand.

Sscrofa11.1:CM000819.5

About this gene

This gene has 4 transcripts (splice variants), 189 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000063769.2	SPARCL1-202	2022	673aa	ENSSSCP00000034214.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZRX5 A0A8D1YPU9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000043019.3	SPARCL1-204	2944	662aa	ENSSSCP00000058888.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BRY6 A0A8D2C7R4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000047296.3	SPARCL1-203	2746	662aa	ENSSSCP00000034088.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZR80	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000062820.3	SPARCL1-201	2007	668aa	ENSSSCP00000054792.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BEN0	-

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Summary

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