Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CCDC88A ENSSSCG00000008406

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Description

coiled-coil domain containing 88A [Source:VGNC Symbol;Acc:VGNC:86325]

Location

Primary_assembly 3: 85,811,127-85,941,864 forward strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 8 transcripts (splice variants), 213 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000066067.3	CCDC88A-203	6248	1873aa	ENSSSCP00000052178.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B7U3 A0A8D1XG15	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000094163.1	CCDC88A-208	9346	1843aa	ENSSSCP00000077322.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FEN7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000009203.4	CCDC88A-206	8770	1843aa	ENSSSCP00000008970.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0Y8E3 F1SQK4	-
ENSSSCT00000032254.3	CCDC88A-207	8692	1817aa	ENSSSCP00000024431.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0YBV2 I3LK17	-
ENSSSCT00000059570.3	CCDC88A-201	8546	1826aa	ENSSSCP00000038953.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A4S9	-
ENSSSCT00000054757.3	CCDC88A-202	6838	1846aa	ENSSSCP00000058119.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BNN0	-
ENSSSCT00000065372.3	CCDC88A-205	6078	1738aa	ENSSSCP00000053942.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BCU6	-
ENSSSCT00000044583.3	CCDC88A-204	5856	1604aa	ENSSSCP00000041288.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AB98	-

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Summary

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