Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Gene: IL1A ENSSSCG00000008090

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Description

interleukin 1 alpha [Source:VGNC Symbol;Acc:VGNC:89091]

Location

Primary_assembly 3: 43,718,368-43,731,119 forward strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 3 transcripts (splice variants) and 91 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000008863.3	IL1A-202	1735	270aa	ENSSSCP00000008638.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P18430	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000082619.1	IL1A-203	1732	269aa	ENSSSCP00000067323.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QZE8 A0A8D0P6S7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000089751.1	IL1A-201	1600	258aa	ENSSSCP00000065513.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R4M2 A0A8D0U743	-

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Summary

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