Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CAPN15 ENSSSCG00000007993

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Description

calpain 15 [Source:VGNC Symbol;Acc:VGNC:86174]

Location

Primary_assembly 3: 41,190,830-41,208,653 reverse strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 3 transcripts (splice variants), 234 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000008759.5	CAPN15-202	5028	1177aa	ENSSSCP00000008535.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UPA8 F1RGT7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000098882.1	CAPN15-203	4679	1141aa	ENSSSCP00000075056.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4F743	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000102913.1	CAPN15-201	2688	895aa	ENSSSCP00000079764.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FKA5	-

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Summary

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