Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PRKDC ENSSSCG00000006274

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Description

protein kinase, DNA-activated, catalytic subunit [Source:VGNC Symbol;Acc:VGNC:91815]

Location

Primary_assembly 4: 79,687,375-79,846,656 forward strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 10 transcripts (splice variants), 184 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000006873.5	PRKDC-201	13416	4136aa	ENSSSCP00000006687.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RSE6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000095866.1	PRKDC-202	13371	4121aa	ENSSSCP00000077463.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FDS6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000039555.3	PRKDC-203	13347	4113aa	ENSSSCP00000040526.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A9N9	-
ENSSSCT00000057372.3	PRKDC-204	13326	4106aa	ENSSSCP00000048998.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AXY0	-
ENSSSCT00000094067.1	PRKDC-205	13305	4099aa	ENSSSCP00000079673.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FL89	-
ENSSSCT00000099369.1	PRKDC-206	13302	4098aa	ENSSSCP00000076132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FBA4	-
ENSSSCT00000101542.1	PRKDC-207	13287	4093aa	ENSSSCP00000077384.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FGE4	-
ENSSSCT00000038758.3	PRKDC-208	13266	4086aa	ENSSSCP00000046738.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AS98	-
ENSSSCT00000104248.1	PRKDC-209	13194	4062aa	ENSSSCP00000079283.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FLV1	-
ENSSSCT00000100067.1	PRKDC-210	13068	4020aa	ENSSSCP00000075733.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4F8X7	-

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Summary

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