Primary_assembly 1: 169,777,596-169,870,892 forward strand.
Sscrofa11.1:CM000812.5
This gene has 7 transcripts (splice variants), 293 orthologues and 5 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSSSCT00000005502.4 | - | 5379 | 788aa | ENSSSCP00000005365.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F1SIP9 | - |
| ENSSSCT00000030475.4 | - | 5301 | 771aa | ENSSSCP00000027225.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | I3LSY2 | - |
| ENSSSCT00000005496.5 | - | 4867 | 1401aa | ENSSSCP00000005359.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4X1SU41 F1SIR4 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000065451.3 | - | 4864 | 1400aa | ENSSSCP00000048731.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287AXQ5 A0A4X1SSM4 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000065104.2 | - | 4824 | 1410aa | ENSSSCP00000039435.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287A6D5 A0A4X1SUF4 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSSSCT00000051414.1 | - | 4441 | 1358aa | ENSSSCP00000034005.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A286ZQW1 A0A4X1SU61 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000083148.1 | - | 4426 | 1353aa | ENSSSCP00000062835.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4X1SU76 A0A5G2QF61 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
