Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: MBD1 ENSSSCG00000004516

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Description

methyl-CpG binding domain protein 1 [Source:HGNC Symbol;Acc:HGNC:6916]

Location

Primary_assembly 1: 99,900,801-99,917,323 reverse strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 4 transcripts (splice variants), 192 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000004988.5	MBD1-203	3136	630aa	ENSSSCP00000004871.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RPP4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000041102.2	MBD1-202	4526	549aa	ENSSSCP00000041254.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ABI3 A0A8D1ACI2	-
ENSSSCT00000053129.3	MBD1-204	3927	586aa	ENSSSCP00000058248.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BQ63	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000037626.3	MBD1-201	2042	556aa	ENSSSCP00000043813.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AIG7 A0A8D1I7R7	-

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Summary

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