Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL12A1 ENSSSCG00000004484

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Description

collagen type XII alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:86864]

Location

Primary_assembly 1: 90,744,612-90,875,118 forward strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 4 transcripts (splice variants), 214 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000004955.5	COL12A1-202	11106	3065aa	ENSSSCP00000004838.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1QHX8 F1RQI0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000080983.2	COL12A1-203	10878	2989aa	ENSSSCP00000064168.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QHA4 A0A8D1KRG2	-
ENSSSCT00000089114.1	COL12A1-201	9111	3036aa	ENSSSCP00000067531.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QRX0	-
ENSSSCT00000074627.1	COL12A1-204	8153	1900aa	ENSSSCP00000062806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QG96 A0A8D1BE36	-

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Summary

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