collagen type XVI alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:86867]
Primary_assembly 6: 88,177,816-88,242,747 reverse strand.
Sscrofa11.1:CM000817.5
This gene has 6 transcripts (splice variants), 106 orthologues and 36 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSSSCT00000065960.2 | COL16A1-205 | 6158 | 1624aa | ENSSSCP00000033997.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A480VGP1 A0A8D1M9R0 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, |
| ENSSSCT00000085546.1 | COL16A1-206 | 6122 | 1612aa | ENSSSCP00000068400.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A5G2QW73 A0A8D1MBC5 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000028180.4 | COL16A1-204 | 5200 | 1608aa | ENSSSCP00000025644.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A8D1J6P5 I3LNH0 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000032016.4 | COL16A1-202 | 5170 | 1609aa | ENSSSCP00000023656.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A8D1LA19 I3LHV9 | - |
| ENSSSCT00000041126.2 | COL16A1-203 | 5159 | 1596aa | ENSSSCP00000031142.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A286ZHY0 A0A8D1J6K4 | - |
| ENSSSCT00000003998.4 | COL16A1-201 | 4854 | 1535aa | ENSSSCP00000003907.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A8D1MAT2 F1SV99 | - |
