Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TRAPPC2L ENSSSCG00000002646

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Description

trafficking protein particle complex subunit 2L [Source:VGNC Symbol;Acc:VGNC:94373]

Location

Primary_assembly 6: 863,805-869,226 reverse strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 4 transcripts (splice variants), 210 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000002936.4	TRAPPC2L-202	1101	135aa	ENSSSCP00000002857.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TE43 F1S6M0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000092912.1	TRAPPC2L-203	2301	109aa	ENSSSCP00000079842.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TDA8 A0A8W4FKV6	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000043380.3	TRAPPC2L-204	2211	109aa	ENSSSCP00000045367.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AMU1 A0A4X1TE48	-
ENSSSCT00000086256.1	TRAPPC2L-201	272	76aa	ENSSSCP00000073713.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TDB7 A0A5G2R8W2	-

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Summary

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