Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL21A1 ENSSSCG00000001500

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Description

collagen type XXI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:17025]

Location

Primary_assembly 7: 29,415,089-29,609,036 forward strand.

Sscrofa11.1:CM000818.5

About this gene

This gene has 4 transcripts (splice variants), 111 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000076946.2	COL21A1-203	4254	957aa	ENSSSCP00000072535.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RDN7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000048738.2	COL21A1-201	4559	453aa	ENSSSCP00000037264.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A0J2 A0A8D0YN73	-
ENSSSCT00000001673.5	COL21A1-204	4251	956aa	ENSSSCP00000001629.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RZU6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000096545.1	COL21A1-202	3092	931aa	ENSSSCP00000077091.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FCP8	-

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Summary

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