Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SLA-DQB1 ENSSSCG00000001457

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Description

SLA-DQ beta1 domain [Source:NCBI gene (formerly Entrezgene);Acc:100037921]

Gene Synonyms

SLA-DQB, SLADQB

Location

Primary_assembly 7: 24,963,208-24,977,386 reverse strand.

Sscrofa11.1:CM000818.5

About this gene

This gene has 4 transcripts (splice variants), 123 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000085744.2	SLA-DQB1-204	899	271aa	ENSSSCP00000062346.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QCN4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000001616.5	SLA-DQB1-201	6383	261aa	ENSSSCP00000001574.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MGP9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000001617.6	SLA-DQB1-202	758	224aa	ENSSSCP00000001575.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6PX38	-
ENSSSCT00000047302.3	SLA-DQB1-203	604	134aa	ENSSSCP00000046366.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AR32 A0A8D0Q8B8	-

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Summary

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