Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SCGN ENSSSCG00000001101

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Description

secretagogin, EF-hand calcium binding protein [Source:VGNC Symbol;Acc:VGNC:92624]

Location

Primary_assembly 7: 20,389,493-20,432,978 forward strand.

Sscrofa11.1:CM000818.5

About this gene

This gene has 2 transcripts (splice variants), 266 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000087451.1	SCGN-201	1513	278aa	ENSSSCP00000061584.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QC00 A0A8D1B8K9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000001197.3	SCGN-202	1507	276aa	ENSSSCP00000001171.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q06A97	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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