Transcript: ENSRNOT00000089933.2 Jup-202

Description

junction plakoglobin [Source:RGD Symbol;Acc:620412]

Location

About this transcript

This transcript has 16 exons, is annotated with 39 domains and features, is associated with 145 variant alleles and maps to 189 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000089933.2	Jup-202	3449	749aa	ENSRNOP00000070840.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2R4T1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000040845.3	Jup-201	3437	745aa	ENSRNOP00000043950.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P0K8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 16, Coding exons: 14, Transcript length: 3,449 bps, Translation length: 749 residues

Version

ENSRNOT00000089933.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.