Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Clic1 ENSRNOG00000029682

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Description

chloride intracellular channel 1 [Source:RGD Symbol;Acc:1303043]

Location

Primary_assembly 20: 3,761,461-3,773,712 reverse strand.

mRatBN7.2:CM026993.1

About this gene

This gene has 5 transcripts (splice variants), 261 orthologues, 18 paralogues and is associated with 9 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000098310.1	Clic1-203	1348	246aa	ENSRNOP00000087153.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A790	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000099306.1	Clic1-204	1381	223aa	ENSRNOP00000088455.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GG89	-
ENSRNOT00000001118.6	Clic1-201	1368	88aa	ENSRNOP00000001118.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2PYP3	-
ENSRNOT00000101151.1	Clic1-205	1007	240aa	ENSRNOP00000091609.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GJS9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000068435.4	Clic1-202	942	235aa	ENSRNOP00000060240.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QSI9	-

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Summary

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