Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Orthologues
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Ontologies
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
Gene expression
Pathway
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Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Sycp1 ENSRNOG00000016835

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Description

synaptonemal complex protein 1 [Source:RGD Symbol;Acc:3794]

Gene Synonyms

SCP-1, SCP1

Location

Primary_assembly 2: 190,296,954-190,456,737 reverse strand.

mRatBN7.2:CM026975.1

About this gene

This gene has 2 transcripts (splice variants), 179 orthologues and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000023333.6	Sycp1-201	3322	997aa	ENSRNOP00000023333.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LS76	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000102018.1	Sycp1-202	3268	979aa	ENSRNOP00000078830.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZLK1	-

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Summary

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